新技术!ecDNA与线性DNA的表观遗传差异研究迎来重要进展
[3] Paulsen T, Kumar P, Koseoglu MM, Dutta A. Discoveries of Extrachromosomal Circles of DNA in Normal and Tumor Cells. Trends Genet. 2018;34(4):270-8.
[4] Verhaak RGW, Bafna V, Mischel PS. Extrachromosomal oncogene amplification in tumour pathogenesis and evolution. Nature Reviews Cancer. 2019;19(5):283-8 %@ 1474-768.
[5] Deshpande V, Luebeck J, Nguyen N-PD, Bakhtiari M, Turner KM, Schwab R, et al. Exploring the landscape of focal amplifications in cancer using AmpliconArchitect. Nature communications. 2019;10(1):1-14 %@ 2041-1723.
[6] Prada-Luengo I, Krogh A, Maretty L, Regenberg B. Sensitive detection of circular DNAs at single-nucleotide resolution using guided realignment of partially aligned reads. BMC Bioinformatics. 2019;20(1):663.
[7] Kumar P, Kiran S, Saha S, Su Z, Paulsen T, Chatrath A, et al. ATAC-seq identifies thousands of extrachromosomal circular DNA in cancer and cell lines. Science Advances. 2020;6(20):eaba2489 %@ 375-548.
[8] Lee I, Razaghi R, Gilpatrick T, Molnar M, Gershman A, Sadowski N, et al. Simultaneous profiling of chromatin accessibility and methylation on human cell lines with nanopore sequencing. Nat Methods. 2020;17(12):1191-9.
[9] Shipony Z, Marinov GK, Swaffer MP, Sinnott-Armstrong NA, Skotheim JM, Kundaje A, et al. Long-range single-molecule mapping of chromatin accessibility in eukaryotes. Nat Methods. 2020;17(3):319-27.
[10] Stergachis AB, Debo BM, Haugen E, Churchman LS, Stamatoyannopoulos JA. Single-molecule regulatory architectures captured by chromatin fiber sequencing. Science. 2020;368(6498):1449-54 %@ 0036-8075.
本文系作者 @华大集团 授权发布在 肽度TIMEDOO。未经许可,禁止转载。